Center for Collections

*This facility is not open to the public as a general rule.

Overview

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Established in July 2006, the Center for Collections collects and carefully stores specimens and materials that illuminate the study of natural history and the history of science and technology. The Center is a vibrant hub of research and academic activities. Formerly the National Museum of Nature and Science held a large assortment of specimen collections, but these were scattered and separately managed among various departments, preventing the systematic collection, management and use of specimens from an overarching perspective. With the establishment of a single collection, the Museum was able to ensure the centralized management of specimens. The Center for Collections was established with the following objectives:

  1. To prepare basic policies for the formation of a national collection
  2. To prepare a framework for the collection and storage of specimens
  3. To prepare a framework for the application and use of the collection
  4. To understand and publish accurately the information in the collection on natural history and the history of science and technology
  5. To coordinate with each Department and the Institute for Nature Study on the use of specimens
  6. To assist and cooperate with similar institutions in (4) above
  7. To conduct surveys, evaluations and public-relations activities concerning the operations of the Center for Collections

Operations

Construction of a National Collection

The Museum aims to construct a national collection, by organizing information on specimens and materials into a database and incorporating specimens and materials on a national scale.

Creating a Database of the Current Collection

Organization of specimens and compiling in a database
All research resources, educational-support resources and resources on preservation of diversity

Analysis of collection after compilation in a database

  1. Identification of especially important or outstanding specimens in the National Museum of Nature and Science collection
  2. Identification of problems that need to be overcome
  3. Establishment of a policy on collection of specimens for the collection going forward

Establishment of a Policy on Collection of Specimens

Additions to the Collection will be made in the course of routine and general research.

Collection Building Fellowship

  1. Support will be provided for research based on the collections of young researchers in Japan. These collections will be added to the database and housed at the Museum.
  2. Researchers will be invited from overseas to conduct research using the Museum's Collection, to assist in organizing the Collection.

The Collection will be enhanced using database analysis.

Collections of outside research facilities and universities will be incorporated into the Collection.
Receiving of specimens will be handled on a priority basis.

Forming a system for the collection and storage of specimens and materials

The most important issue for the Museum is to preserve scientific specimens and materials, an intellectual asset for all humanity in common, to bequeath to future generations. The Center for Collections stands at the forefront of this effort.

Collection and Management of Specimens and Materials

The specimens and other materials collected and stored at the National Museum of Nature and Science are the common intellectual property of the whole human race. They are made public for research and education, to be used as research materials today and into the future. They enhance the collections of museums in every country, and are widely recognized as an extremely important heritage to be passed on to future generations, as the wide-ranging information gleaned from them can be expected to yield results vital for the future of humanity. Collecting, storing and conducting research using this intellectual property is a crucially important role that no organ or organization other than the Museum can fulfill.

These specimens and materials serve not only as research materials, from which new discoveries can be expected in the future, but also as evidence, providing confirmation of research hypotheses and conclusions. The preservation and safekeeping of these valuable specimens and materials, which are the intellectual property of all humanity, is the Museum's most important mission.

The National Museum of Nature and Science is one of Japan's foremost museums of natural science and the history of science and technology, and constantly seeks out and collects type specimens and other materials related to these disciplines. In certain fields, the Museum is among the greatest repositories of such assets in the world. Recently, the Museum has begun analyzing and storing DNA samples, teasing out the unbroken history of life on Earth from its emergence 4 billion years ago to the present. The Museum is conducting gene monitoring to unlock the history of the diversity of life and the speciation process. At Tsukuba Botanical Garden and the Institute for Nature Study, a great range of living things are cultivated and housed. These facilities are expected to play an important part in experimental research and collecting activities to preserve endangered plant species.

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Joint Database of Specimens and Materials

Maintaining specimens consistently throughout the Museum requires construction of a database with a standardized data entry format. The Museum's Joint Database of Specimens and Materials is designed to incorporate specimens efficiently into the database while enabling appropriate specimen management. This database plays a central role not only in research activities but also in a broad gamut of important Museum activities. The information in the joint database is automatically uploaded to Science Museum Net and GBIF. The joint database extends and expands the Museum's contributive functions as a center of research and information on Japan's natural history and history of science and technology.

Preparation of a system for using the specimens and materials

Introduces the Museum's efforts to prepare a system for using specimens and materials.

Specimens and Materials for Loan

The Museum lends specimens or materials from its collection to research institutions, such as museums and universities, for research or exhibition purposes. As a general rule, we do not lend specimens or materials for educational purposes to schools or other educational institution

If you wish to borrow specimens or materials, please check the “Profile of Researchers” page on the National Museum of Nature and Science website to find the researcher in charge, and contact them directly. Please note the following information when contacting them.

  1. Include your name and affiliation.
  2. Briefly describe the purpose of the loan and how the specimens or materials will be used for research. If you have preferences regarding the type and number of specimens you wish to borrow, as well as the collection site, date, size, gender, etc., please specify them.
  3. If you wish to borrow a specific specimen with a catalog number, please specify it.

*Please note that we may decline your requests after reviewing the purpose of the loan, the borrower’s affiliation, and the suitability of the specimen or material for lending.

If you wish to borrow specimens or materials for purposes other than research, or if you are unsure who to contact, please consult with the Center for Collections.
Email:collection-center@kahaku.go.jp

Reference information

Information on specimens or materials stored in our museum can be found in the Collection Database of Specimens and Materials(リンクを新しいタブで開きます). Please refer to the database to search for the specimens or materials you wish to borrow. Please note that only a portion of our collection is available in the database and that not all specimens or materials are listed.


Publication of a database

Introduces the Museum's efforts to prepare a system for using specimens and materials.

Collection Policy

Basic Policy on Collections

Approved by the President on March 25, 2016
Last revised: March 26, 2024 (Approved by the President)

As the core research institution for natural history and the history of science and technology, the National Museum of Nature and Science conducts research to promote an understanding of nature and of science and technology, with a particular focus on Japan. Furthermore, as a leading museum in Japan, we also serve to share our intellectual and material resources—accumulated through research and the collection of specimens and materials—widely with the public through exhibitions, educational programs, and other initiatives. Therefore, as Japan's leading national collection, we must continuously expand it with items from a wide range of sources, achieving a quantity and quality that can be proudly showcased internationally. In collaboration with museums and universities across Japan, we must build and preserve this national collection, while also serving as a safety net to prevent the loss and dispersal of the precious specimens, materials, and living collections gathered and studied by our predecessors.
The Museum's collection provides the physical materials that form the basis for research that deepens our understanding of the Earth, life, and science and technology, and that prompts us to consider the ideal relationship between humanity, nature, and technology. It also serves as physical evidence that validates the results of this research. These materials are also utilized in exhibitions and educational programs to help foster scientific literacy among the public. By comprehensively analyzing the vast amount of information—or big data—accumulated from our specimens and materials, we can apply data science to decipher Japan's natural history. Therefore, in order to support these activities, we must systematically build this collection of specimens and materials not only through direct collection, but also through accepting donations and making purchases as needed. Working with other institutions, we must ensure this collection—a common heritage of humanity—is preserved for future generations. Furthermore, this established collection is expected to be actively utilized, leading to the discovery of new value and significance, and the dissemination and sharing of these insights to the public.

  • As the core research institution for natural history and the history of science and technology in Japan, the Museum's primary collection targets are specimens, materials, and living collections related to natural history, as well as historical materials for science and technology concerning the history of science, technology, and industry. This collection spans a wide range of categories, including animals, plants, fungi, rocks, minerals, fossils, human skeletal remains, and materials on the history of science and technology.
  • The primary collection areas for specimens, materials, and living collections related to natural history are Japan, East Asia, and Southeast Asia. Marine collections are primarily from the waters around the Japanese Archipelago and the western North Pacific. In terms of historical materials for science and technology, the focus is mainly on Japan, but overseas materials are also acquired as needed.
  • Collection activities are primarily carried out by curators and research assistants in their respective fields, in accordance with research plans for basic and integrated research.
  • To build on the Museum's strengths and address its weaknesses, the Center for Collections collaborates with each research department to collect materials from regions and periods not previously represented in the collection and to enrich its holdings with taxonomic groups it currently lacks. We also accept donations from museums, universities and other research institutions, researchers, and individual collectors through the Natural History Specimen Safety Net.
  • In terms of historical materials for science and technology, we accept donations from museums, universities and other research institutions, companies, and individuals. The Center for the History of Japanese Industrial Technology collaborates with industry associations, academic societies, and companies to collect information on historical materials on industrial technology. The information obtained through these activities is shared with the Department of Science to facilitate the conservation of socially important materials and the acquisition of new collections.
  • Academically valuable specimens, materials, and living collections that are for sale are purchased after an evaluation of their academic merit and price by curators in the relevant fields and the Center for Collections. For materials related to science, the Center for the History of Japanese Industrial Technology also participates in the evaluation process where necessary.

1. Collection Policy for Each Research Field

1) Zoology
  • To build an inventory of organisms in Japan, we collect specimens primarily through fieldwork, focusing on animals that inhabit Japan and its surrounding regions and seas.
  • We prioritize collecting specimens from underrepresented taxonomic groups and localities not yet represented in our collection. For taxonomic groups in which we have no in-house experts, we acquire specimens by collaborating with museums and research institutions in Japan and abroad, working with external researchers and accepting donations.
  • We aim to compile information on all species native to Japan, including their classifications, phylogeny, and DNA, while also expanding our collection of images and other materials.
  • We will also build our collection by acquiring specimens from around the world—primarily from neighboring Asian countries—to better understand Japan's fauna and biodiversity, explore their origins, and contribute to their conservation.
2) Botany
  • To build an inventory of organisms in Japan and surrounding Asian regions, we collect specimens and materials from all eukaryotes other than animals and some prokaryotes—namely seed plants, ferns, mosses, algae, lichens, and fungi.
  • Through field surveys and specimen exchanges, we prioritize collecting specimens from unrepresented taxonomic groups and localities. In collaboration with museums and universities both in Japan and abroad, we also aim to compile data on the classification, phylogeny, DNA, and metabolic products of species in Japan and surrounding Asian regions.
  • To deepen our understanding of the biodiversity and co-evolution of organisms including plants and fungi in Japan and surrounding Asian regions, we collaborate with museums, universities, and botanical gardens in Japan and abroad to collect plants and fungal specimens from all taxonomic groups.
  • For seed plants and ferns, we study the biological characteristics of our living collection, particularly those that are endangered and endemic species from Japan, to gather fundamental information for their conservation.
3) Geology and Paleontology
  • We focus on collecting rocks and minerals from the Japanese archipelago, while also extending our scope to include surrounding regions. We actively collect specimens of new species and those from unrepresented localities. In collaboration with museums and universities in Japan, we also aim to understand information on all mineral specimens from Japan.
  • To elucidate the relationship between biotic evolution and paleoenvironment and paleoecology throughout geological time, we collect fossils of flora and fauna, as well as microfossils, from the Japanese archipelago and its surrounding regions. We also actively accept fossil collections held by individuals and universities.
  • We serve as the primary Asian hub for the international organization, the Micropaleontology Reference Center (MRC), and collaborate with universities and research institutions in Japan to systematically collect microfossils and related materials.
4) Anthropology
  • We collect important fossil specimens to understand human evolution, origins, and expansion. For foreign specimens with export restrictions, we also collect intricate replicas and 3D data obtained using equipment such as CT scanners.
  • In collaboration with boards of education across Japan, we collect ancient human skeletal remains from the Paleolithic to the Edo period to clarify the formation process and life history of the populations of the Japanese archipelago.

5) Science
  • To preserve the legacy of Japan's science, technology, and industry and contribute to their sustainable development, we systematically collect relevant materials and information. For historical materials on industrial technology, we promote initiatives for the conservation of socially important materials, such as by conducting location surveys in addition to their collection.
  • In collaboration with domestic stakeholders and related organizations, we systematically collect historical materials for science and technology and related information in Japan, as well as relevant materials and information from overseas. We also collaborate with science and engineering museums and other relevant institutions in Japan and abroad to build a network for sharing information on materials.

2. Genetic Resource Collection

  • At the Center for Molecular Biodiversity Research, we comprehensively collect, store, and manage tissue samples, extracted DNA, voucher specimens, and DNA sequence data, focusing primarily on organisms found in Japan. Through these efforts, we aim to enhance our collection to promote DNA research and build a framework that makes these resources available to researchers in related fields.
  • At the Tsukuba Botanical Garden, we utilize our cultivation fields and tissue culture facilities to promote ex-situ conservation, focusing on endangered and Japanese endemic plants, and strive to secure individual plants that can be used for purposes such as reintroduction into the wild.

3. Compliance with International Treaties

  • When acquiring and utilizing specimens and materials, especially genetic resources (including biological specimens), we comply with all relevant treaties, laws, and regulations, such as the "Convention on International Trade in Endangered Species of Wild Fauna and Flora," "Convention on Biological Diversity," and the "Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization to the Convention on Biological Diversity."
  • Any benefits arising from the use of genetic resources shall be shared fairly and equitably with their provider countries and other stakeholders. Further details will be stipulated separately.

4. Acceptance through the Natural History Specimen Safety Net

  • For natural history specimens and living collections that require permanent storage as part of the national collection but have become difficult to maintain at their current universities or museums, we will actively work to accept them through the operation of the Natural History Specimen Safety Net—a collaborative network established with other natural history museums to prevent the loss and dispersal of these valuable materials.
  • As an emergency measure, we will accept and work to conserve important collections, such as those of endangered species, that other botanical gardens in Japan have found difficult to maintain.

5. Acceptance through the Network of Science and Engineering Museums

  • To prevent the loss and dispersal of valuable science and engineering materials, we will actively acquire those requiring permanent storage as part of the national collection—particularly from science and engineering museums, universities, research institutions, companies, and individuals that find continued storage difficult. This will be achieved through collaboration with networks of science and engineering museums, academic societies, and industry organizations.
  • While preservation methods vary for different specimens and materials, all specimens and materials must be permanently preserved in good condition. For living collections, every effort must be made to prevent their death.
  • Collection managers (Note 1) are responsible for managing and maintaining the proper environment in specimen and material rooms and cultivation fields. They must also implement various measures, such as incorporating the findings of preservation science research, and establish systems to ensure that specimens, materials, and living collections are readily available for use.
  • To ensure the proper preservation of the national collection, which is extensive in both quality and quantity, we will secure the necessary storage space, taking into account the specific characteristics of each field. In doing so, we will also consider making the specimens, materials, and living collections accessible to the public, for example, by developing storage facilities that also serve as exhibition spaces.
  • We will operate the "Natural History Specimen Safety Net" in collaboration with member organizations to prevent the loss of valuable collections in Japan.
  • As the core of the "National Network of Botanic Gardens for the Conservation of Plant Diversity," we will collaborate with botanical gardens and other related institutions in Japan to systematically preserve the nation's important collections, including endangered species.

*Note 1: The term "collection manager" refers to the individuals responsible for collecting, organizing, and storing specimens, materials, and living collections, as stipulated in the Museum's regulation titled "Scope of Materials to be Collected, Organized, and Stored by Curators of the Independent Administrative Institution National Museum of Nature and Science."

  • The Museum's collections shall be made available for research, exhibitions, and educational programs, both within and outside the Museum. When using the collections, all users must follow the instructions of the collection manager.
  • Use of specimens, materials, and living collections may be restricted depending on factors like their condition and the quantity preserved.
  • The procedures for the loan, exchange, and transfer of collections shall be stipulated separately.
  • To promote the use and application of our collections, the Museum strives to acquire new knowledge through the examination of collected specimens and re-examination of existing ones, working to maximize the value of our specimens and materials. In addition to the morphology and collection data of specimens, the Museum will also strive to comprehensively acquire and utilize new types of data.
  • Leveraging a wide range of data, we aim to build a leading national scientific digital archive that promotes the use of not only the physical specimens themselves but also their associated information. We will also disseminate information to the scientific community and society through external digital archives such as Japan Search and the Global Biodiversity Information Facility (GBIF), thereby contributing to the promotion of open science.
  • We will advance the digitization of information on our specimens, materials, and living collections. We will also enhance our public web pages and open data, such as the Collection Database of Specimens and Materials, to actively disseminate this information. However, restrictions may be placed on the information disclosed, depending on the nature of the specimens, materials, and living collections, or for administrative reasons.
  • In terms of the publishing of information on natural history specimens, in collaboration with science museums nationwide, we will work on developing a system that enables cross-searching of their location data through the operation of the Science Museum Net (S-Net), going beyond publishing information on specimens from the Museum only.
  • For historical materials on industrial technology, we will conduct location surveys to identify the locations of those held by companies, individuals, and science museums, while also enhancing and publishing our databases. In coordination with other institutions and based on a clear division of roles, we will promote the preservation and use of these socially important materials.
  • We will establish a framework to communicate the importance of specimens and to highlight our commitment to their proper maintenance, management, and use.
  • The academic value of a specimen or material is considered significantly diminished if it is found to be severely damaged, if a living collection has died, or if it cannot be linked to essential information, such as collection data. In such cases, the collection manager may dispose of the specimens and materials after following the prescribed procedures.
  • This basic policy will be reviewed as necessary in conjunction with the preparation of the medium-term plan.

Staff

The Center for Collections is composed of the Collection Director, Deputy Collection Director, Collection Managers affiliated with research departments and a center within the museum, Assistant Researchers (postdoctoral fellows), and Technical Assistants.

Director Tsuyoshi Hosoya
Deputy Director Utsugi Jinbo
Managers Department of Zoology: Shuhei Nomura
Department of Botany: Atsushi Ebihara, Yoshinori Murai
Department of Paleontology and Anthropology: Takanobu Tsuihiji, Kazuhiro Sakaue
Department of Science: Koichi Momma, Satoko Murotani
Center for the History of Japanese Industrial Technology: Takahiko Kutsuna
Assistant Researchers Minako Abe Ito, Showtaro Kakizoe, Aino T. Ota
Technical Assistants Chisako Sakata, Chiho Emori

Access

The Center for Collections is located in the Museum's Tsukuba Resaerch Facility. For information on access by road or public transportation to the Tsukuba Research Facility, please click the link below.