Shinohara, G., 2006. A rare jawfish, Stalix immaculata (Perciformes: Opistognathidae), from Sagami Bay, Japan. Mem. Natn. Sci. Mus., Tokyo, 41: 335-340.

Shinohara, G. & J.T. Williams, 2006. Historical Japanese fish specimens from the Sagami Sea in the National Museum of Natural History, Smithsonian Institution. Mem. Natn. Sci. Mus., Tokyo, 41: 543-568.

Senou, H., K. Matsuura & G. Shinohara, 2006. Checklist of fishes in the Sagami Sea with zoogeographical comments on shallow water fishes occurring in the coasts under the influence of the Kuroshio Current. Mem. Natn. Sci. Mus., Tokyo, 41: 389-542.

Year 2005(H17):
Shinohara, G., K. Hasegawa, A. Go, K. Nakaguchi, H. Horikawa & M. Takeda, 2005. An outline of “Research on Deep-Sea Fauna and Pollutants in Nansei Islands, 2002-2004.” Deep-sea Fauna and Pollutants in Nansei Islands. Natn. Sci. Mus. Monogr., (29): 1-15.

Shinohara, G., T. Sato, Y. Aonuma, H. Horikawa, K. Matsuura, T. Nakabo & K. Sato, 2005.Annotated checklist of deep-sea fishes from the waters around the Ryukyu Islands, Japan.
Deep-sea Fauna and Pollutants in Nansei Islands. Natn. Sci. Mus. Monogr., (29): 385-452.

Imamura, H., G. Shinohara & M. Shiogaki, 2005. Redescovery of the type specimens of Lycenchelys brevimaxillaris (Actinopterygii: Perciformes: Zoarcidae) with taxonomic notes on the species. Species Diversity, 10:1-6.

Shinohara, G. & H. Imamura, 2005. Anatomical description and phylogenetic classification of the orbicular velvetfishes (Scorpaenoidea: Caracanthus). Ichthyol. Res., 52: 64-76.

Shinohara, G. & Shigeru M. Shirai, 2005. Lycodes nishimurai, a new deep-sea eelpout (Teleostei: Zoarcidae) from the Sea of Japan. Ichthyol. Res., 52: 171-175.

Motomura, H. & G. Shinohara, 2005. Assessment of taxonomic characters of Scorpaenopsis obtusa and S. gibbosa (Scorpaenidae), with first records of S. obstusa from Japan and Australia and comments on the synonymy of S. gibbosa. Cybium, 29: 295-301.

Shinohara, G. & H. Imamura, 2005. Phylogenetic studies of the "scorpaeniform" fishes-new information since 1998. Taxa, Proc. Jpn. Soc. Syst. Zool., 18: 20-29. (In Japanese with English abstract.)

Year 2004(H16):
Imamura, H. & G. Shinohara, 2004. A new species of Cocotropus (Actinopterygii: Teleostei: Aploactinidae) from South Africa, western Indian Ocean. Species Diversity, 9: 201-205.

Machida, Y., G. Shinohara & S. Ohta, 2004. A new deep-sea eelpout, Hadropogonichthys leptopus (Osteichthyes: Perciformes: Zoarcidae), from the Pacific Ocean off Japan. Species Diversity, 9: 1931-200.

Shinohara, G., M. V. Nazarkin & I. A. Chereshnev, 2004. Magadania skopetsi, a new genus and species of Zoarcidae (Teleostei: Perciformes) from the Sea of Okhotsk. Ichthyol. Res., 51(2): 137-145.

Year 2003(H15):
Imamura, H. & G. Shinohara, 2003. Cocotropus keramaenesis, a new species of the family Aploactinidae (Teleostei) from the Kerama Islands, southern Japan. Ichthyol. Res., 50(3): 233-238.

Kanou, K., G. Shinohara & K. Shibukawa, 2003. Juvenies of a rare callanthiid fish genus Grammatonotus (Pisces: Perciformes) from Japan. Bull. Natn. Sci. Mus., Tokyo, Ser. A, 29(1): 39-46.

Year 2002(H14):
Senou, H., G. Shinohara, K. Matsuura, K. Furuse, S. Kato & T. Kikuchi, 2002. Fishes of Hachijo-jima Island, Izu Islands Group, Tokyo, Japan. Mem. Natn. Sci. Mus., Tokyo, (38): 195- 237.

Shinohara, G., H. Sakurai & Y. Machida, 2002. Japonolycodes, a new genus for Davidijordania abei Matsubara, 1936 (Pisces: Zoarcidae). Mar. Freshwater Res., 53: 287-301.

Year 2001(H13):
Shinohara, G., H. Endo, K. Matsuura, Y. Machida & H. Honda, 2001. Annotated checklist of the deepwater fishes from Tosa Bay, Japan. Natn. Sci. Mus. Monogr., (20):283-343.

Chereshnev, I., M. Nazarkin, M. Skopets, D. Pitruk, A. Shestakov, M.Yabe, G. Shinohara & N. Suzuki, 2001. Annotated list of fish-like vertebrates and fish in Tauisk Bay (northern part of the Sea of Okhotsk). Pages 64-86 in Biodivaersity and Ecological Status along the Northern Coast of the Sea of Okhotsk-A Collection of Study Reports. Dalnauka, Vladivostok.

Matsuura, K., K. Shibukawa, G. Shinohara and J. Liu, 2001. Fishes collected from the shallow waters of Hainan Island, South China Sea. Natn. Sci. Mus. Monogr., (21):101-126.

Year 2000(H12):
Matsuura, K., G. Shinohara, K. Arai & M. Nishida, 2000. Fishes from the inside moats of the Imperial Palace, Tokyo, Japan. Mem. Natn. Sci. Mus., Tokyo, (35): 57-68.

Shinohara, G., Y. Sato and K. Matsuura, 2000. Coastal fishes of Ishima Island, Tokushima, Japan. Mem. Natn. Sci., Tokyo, (33): 175-186.

Year 1999(H11):
Shinohara, G., 1999. A new jawfish, Stalix toyoshio, from Kyushu, Japan (Perciformes: Opistognathidae). Ichthyol. Res., 46(3): 267-270.

Endo, H. & G. Shinohara, 1999. A new batfish, Coelophthys bradburyae (Lophiiformes: Ogcocephalidae) from Japan, with comments on the evolutionary relationships of the genus. Ichthyol. Res., 46: 359-365.

Year 1998(H10):
Shinohara, G., 1998. Record of a scorpaenid fish, Scorpaenodes varipinnis from Japan. Japan. J. Ichthyol., 45: 37-41. (In Japanese with English abstract.)

Shinohara, G., K. Matsuura & S. Shirai, 1998. Fishes of Tachibana Bay, Nagasaki, Japan. Mem. Natn. Sci. Mus., Tokyo, (30): 105-138.

Shinohara, G. & K. Matsuura, 1998. A new zoarcid, Lycenchelys aurantiaca, from the Pacific coast off northern Japan (Teleostei: Perciformes). Ichthyol. Res., 45(2): 151-155.

Imamura, H. & G. Shinohara, 1998. Scorpaeniform fish phylogeny: an overview. Bull. Natn. Sci. Mus., Tokyo, Ser. A, 24(3): 185-212.

Shinohara, G. & K. Shibukawa, 1998. A rare cirrhitid fish, Amblycirrhitus unimacula from the Ryukyu Islands, Japan. Bull. Natn. Sci. Mus., Tokyo, Ser. A, 24(4): 261-267.

Year 1997(H9):
Shinohara, G. &K. Matsuura, 1997. Anotated checklist of deep-water fishes from Suruga Bay, Japan. Natn. Sci. Mus. Monogr., (12): 269-318. pls. 1-2.

Kido, K. & G. Shinohara, 1997. First record of a liparid fish, Careproctus melanurus (Teleostei, Scorpaeniformes), from Japan. Bull. Natn. Sci. Mus., Tokyo, Ser. A, 23(2), 127-130.

Imamura. H. &G. Shinohara, 1997. Phylogenetic studies of the order Scorpaeniformes (Pisces: Acanthopterygii): progress, present condition and problems. Jpn. J. Ichthyol., 44: 77-95. (In Japanese.)

Year 1996(H8):
Kido, K. & G. Shinohara, 1996. Pelagocyclus vitiazi Lindberg & Legeza, 1955, a junior synonym of Aptocyclus ventricosus (Pallas, 1769) (Scorpaeniformes: Cyclopteridae). Ichthyol. Res., 13(2): 175-177.

Shinohara, G., H. Endo & K. Matsuura, 1996. Deep-water fishes collected from the Pacific coast of northern Honshu, Japan. Mem. Natn. Sci. Mus., Tokyo, (29), 154-185.

Year 1994(H6):
Shinohara, G. & K. Amaoka, 1994. Stellistius katsukii Jordan et Tanaka, 1927, a junior synonym of Pleurogrammus azonus Jordan et Metz, 1913 (Scorpaeniformes: Hexagrammidae). Jpn. J. Ichthyol., 40(4): 487-490.

Shinohara, G., 1994. Comparative morphology and phylogeny of the suborder Hexagrammoidei and related taxa (Pisces: Scorpeaniformes). Mem. Fac. Fish. Hokkaido Univ., 41(1): 1-97.

Shinohara, G., M. Yabe, K. Nakaya, G. Anma, S. Yamaguchi & K. Amaoka, 1994. Deep-sea fishes collected from the North Pacific by the T/S OSHORO-MARU. Bull. Fac. Fish. Hokkaido Univ., 45(2): 48-80.

Shinohara, G., M. Yabe & T. Honma. 1994. Occurrence of the scorpaenid fish, Sebastes ciliatus, from the Pacific coast of Hokkaido, Japan. Bull. Biogeogr. Soc. Japan, 49(1): 61-64.

Year 1993(H5):
Shinohara, G. & K. Amaoka. 1993. Albino specimen of Sebastolobus macrochir collected from the Shimokita Peninsula, northern Japan. Jpn. J. Ichthyol., 39(4): 395-397.

Year 1992(H4):
Shinohara, G., H. Yoshida, & M. Yabe, 1992. First record of Bathymaster signatus (Perciformes: Bathymasteridae) from Japan. Jpn. J. Ichthyol., 39(2):163-166.

Shinohara, G., M. Yabe, K. Amaoka & T. Meguro. 1992. A psychrolutid, Malacocottus gibber, collected from the mesopelagic zone of the Sea of Japan, with comments on its intraspecific variation. Jpn. J. Ichthyol., 38(4): 419-424.