図録参考文献一覧A List of References

【p. 10~19】

脊椎動物の歴史  一つの見方 山田 格

History of Vertebrates -A Personal View by Tadasu K. Yamada

Clarke JM. 1888. The structure and development of the visual area in the trilobite, Phacops rana, Green. Journal of Morphology 2: 253-270.

Gehring WJ. 2005. New perspectives on eye development and the evolution of eyes and photoreceptors. Journal of Heredity 96: 171-184.

Griffiths M. 1979. The biology of the monotremes. Academic Press: New York.

Kasting JF. 1993. Earth's early atmosphere. Science 259: 920-926.

Kimura M. 1968. Evolutionary rate at the molecular level. Nature 217: 624-626.

Kosaka N, Iguchi H, Ochiya T. 2010. Circulating microRNA in body fluid: a new potential biomarker for cancer diagnosis and prognosis. Cancer science 101: 2087-2092.

Morris SC. 1979. Middle Cambrian polychaetes from the Burgess shale of British Columbia. Philosophical Transactions of the Royal Society B: Biological Sciences 285: 227-274.

Morris SC, Caron JB. 2014. A primitive fish from the Cambrian of North America. Nature 512: 419-422.

Ohno S. 1970. Evolution by gene duplication. Springer Science & Business Media: New York.

Paterson JR, García-Bellido DC, Lee MS, Brock GA, Jago JB, Edgecombe GD. 2011. Acute vision in the giant Cambrian predator Anomalocaris and the origin of compound eyes. Nature 480: 237-240.

Sekita Y, Wagatsuma H, Nakamura K, Ono R, Kagami M, Wakisaka N, Hino T, Suzuki-Migishima R, Kohda T, Ogura A. 2008. Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta. Nature genetics 40: 243-248.

Shichida Y, Imai H. 1998. Visual pigment: G-protein-coupled receptor for light signals. Cellular and Molecular Life Sciences CMLS 54: 1299-1315.

Tanaka G. 2013. Functional morphology of the arthropod eye - towards the reconstruction of the visual world of ancient animals. Bulletin of Gunma Museum of Natural History 17: 25-48.

Walcott CD. 1911. Cambrian geology and paleontology II no. 5.—Middle Cambrian annelids. Smithsonian Miscellaneous Collections 57: 109-144.

Watson JD, Crick FH. 1953. Molecular structure of nucleic acids. Nature 171: 737-738.

Yang D, Oyaizu Y, Oyaizu H, Olsen GJ, Woese CR. 1985. Mitochondrial origins. Proceedings of the National Academy of Sciences 82: 4443-4447.

*The followings are added to the reference list for English version thanks to the advice from Dr. S. Kuratani.

Kuratani S. 2012. Evolution of the vertebrate jaw from developmental perspectives. Evolution & Development 14: 76–92.

Shigetani Y, Sugahara F, Kawakami Y, Murakami Y, Hirano S, Kuratani S. 2002.Heterotopic shift of epithelial-mesenchymal interactions in vertebrate jaw evolution. Science 296: 1316-1319.

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【p. 21~176】


Exhibition Catalogue

Benton M. 2014. Vertebrate palaeontology. John Wiley & Sons, Inc.: Hoboken.

Hou X-g, Aldridge R, Bergstrom J, Siveter DJ, Siveter D, Feng X-H. 2008. The Cambrian fossils of Chengjiang, China: the flowering of early animal life. John Wiley & Sons, Inc: Hoboken.

Raup DM, Sepkoski JJ. 1984. Periodicity of extinctions in the geologic past. Proceedings of the National Academy of Sciences 81: 801-805.

Wangsjo G, Vogt T. 1952. Morphologic and Systematic Studies of the Spitsbergen Cephalaspids: Results of Th. Vogt's Expedition 1928, and the English-Norwegian-Swedish Expedition 1939. Norsk Polarinstitutts Skrifter 97: 1-611.

冨田幸光, 伊藤丙雄, 岡本泰子. 2011. 新版絶滅哺乳類図鑑. 丸善出版: 東京.

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【p. 185~189】

カンブリア紀に興った眼の爆発的な進化 田中 源吾

The Explosive Evolution of the Eye Flourished in Cambrian Animals by Gengo Tanaka

Budd GE, Jensen S. 2000. A critical reappraisal of the fossil record of the bilaterian phyla. Biological Reviews 75: 253-295.

Chen P, Ruffini R. 2014. Did Gamma Ray Burst Induce Cambrian Explosion? arXiv:1403.7303 [astro-ph.HE].

Cong P, Ma X, Hou X, Edgecombe GD, Strausfeld NJ. 2014. Brain structure resolves the segmental affinity of anomalocaridid appendages. Nature.

Erwin DH, Laflamme M, Tweedt SM, Sperling EA, Pisani D, Peterson KJ. 2011. The Cambrian conundrum: early divergence and later ecological success in the early history of animals. Science 334: 1091-1097.

Feigenbaum DL, Maris RC. 1984. Feeding in the Chaetognatha. Oceanography and Marine Biology: An Annual Review 22: 343-392.

Holland HD. 2006. The oxygenation of the atmosphere and oceans. Philosophical Transactions of the Royal Society B: Biological Sciences 361: 903-915.

Holland PW. 2015. Did homeobox gene duplications contribute to the Cambrian explosion? Zoological Letters 1: 1.

Hou X-g, Aldridge R, Bergstrom J, Siveter DJ, Siveter D, Feng X-H. 2008. The Cambrian fossils of Chengjiang, China: the flowering of early animal life. John Wiley & Sons.

Knoll AH, Carroll SB. 1999. Early animal evolution: emerging views from comparative biology and geology. Science 284: 2129-2137.

Ma X, Hou X, Edgecombe GD, Strausfeld NJ. 2012. Complex brain and optic lobes in an early Cambrian arthropod. Nature 490: 258-261.

Macdonald FA, Pruss SB, Strauss JV. 2014. Trace fossils with spreiten from the late Ediacaran Nama Group, Namibia: complex feeding patterns five million years before the Precambrian-Cambrian boundary. Journal of Paleontology 88: 299-308.

Marshall CR. 2006. Explaining the Cambrian “explosion” of animals. Annual Review of Earth and Planetary Science 34: 355-384.

Menge C, Wenwu Z. 1986. On the pre-Ediacaran Huainan Biota. Scientia Geologica Sinica 3: 221-231.

Nilsson D-E, Pelger S. 1994. A pessimistic estimate of the time required for an eye to evolve. Proceedings of the Royal Society of London B: Biological Sciences 256: 53-58.

Parker A. 2003. In the blink of an eye: how vision kick-started the big bang of evolution. Simon & Schuster / Perseus Press: London.

Parker AR. 1998. Colour in Burgess Shale animals and the effect of light on evolution in the Cambrian. Proceedings of the Royal Society of London B: Biological Sciences 265: 967-972.

Parker AR. 2011. On the origin of optics. Optics & Laser Technology 43: 323-329.

Paterson JR, García-Bellido DC, Lee MS, Brock GA, Jago JB, Edgecombe GD. 2011. Acute vision in the giant Cambrian predator Anomalocaris and the origin of compound eyes. Nature 480: 237-240.

Peters SE, Gaines RR. 2012. Formation of the/Great Unconformity/'as a trigger for the Cambrian explosion. Nature 484: 363-366.

Plotnick RE, Dornbos SQ, Chen J. 2010. Information landscapes and sensory ecology of the Cambrian Radiation. Paleobiology 36: 303-317.

Pufahl P, Hiatt E. 2012. Oxygenation of the Earth's atmosphere–ocean system: a review of physical and chemical sedimentologic responses. Marine and Petroleum Geology 32: 1-20.

Rehm P, Borner J, Meusemann K, von Reumont BM, Simon S, Hadrys H, Misof B, Burmester T. 2011. Dating the arthropod tree based on large-scale transcriptome data. Molecular Phylogenetics and Evolution 61: 880-887.

Santosh M, Maruyama S, Sawaki Y, Meert JG. 2014. The Cambrian Explosion: Plume-driven birth of the second ecosystem on Earth. Gondwana Research 25: 945-965.

Shu D, Isozaki Y, Zhang X, Han J, Maruyama S. 2014. Birth and early evolution of metazoans. Gondwana Research 25: 884-895.

Tanaka G, Hou X, Ma X, Edgecombe GD, Strausfeld NJ. 2013. Chelicerate neural ground pattern in a Cambrian great appendage arthropod. Nature 502: 364-367.

Vannier J, Steiner M, Renvoisé E, Hu S-X, Casanova J-P. 2007. Early Cambrian origin of modern food webs: evidence from predator arrow worms. Proceedings of the Royal Society of London B: Biological Sciences 274: 627-633.

Yuan J, Zhu X, Lin J, Zhu M. 2011. Tentative correlation of Cambrian Series 2 between South China and other continents. Bulletin of Geosciences 86: 397-404.

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【p. 190~193】

新生代哺乳類の放散はいつ、どのように起こったのか 冨田 幸光

When and How Did the Cenozoic Mammals Radiate? By Yukimitsu Tomida

Bininda-Emonds OR, Cardillo M, Jones KE, MacPhee RD, Beck RM, Grenyer R, Price SA, Vos RA, Gittleman JL, Purvis A. 2007. The delayed rise of present-day mammals. Nature 446: 507-512.

Ji Q, Luo Z-X, Yuan C-X, Wible JR, Zhang J-P, Georgi JA. 2002. The earliest known eutherian mammal. Nature 416: 816-822.

Kielan-Jaworowska Z, Cifelli R, Luo Z-X. 2004. Mammals from the age of dinosaurs: origins, evolution, and structure. Columbia Univ. Press: New York.

Luo Z-X. 2007. Transformation and diversification in early mammal evolution. Nature 450: 1011-1019.

Luo Z-X, Ji Q, Wible JR, Yuan C-X. 2003. An Early Cretaceous tribosphenic mammal and metatherian evolution. Science 302: 1934-1940.

Luo Z-X, Yuan C-X, Meng Q-J, Ji Q. 2011. A Jurassic eutherian mammal and divergence of marsupials and placentals. Nature 476: 442-445.

Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW. 2001. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294: 2348-2351.

Murphya WJ, Eizirikb E. 2009. Placental mammals (Eutheria). In: Hedges SB and Kumar S, eds. The timetree of life: Oxford University Press. 471-474.

O'Leary MA, Bloch JI, Flynn JJ, Gaudin TJ, Giallombardo A, Giannini NP, Goldberg SL, Kraatz BP, Luo Z-X, Meng J. 2013. The placental mammal ancestor and the post–K-Pg radiation of placentals. Science 339: 662-667.

Welker F, Collins MJ, Thomas JA, Wadsley M, Brace S, Cappellini E, Turvey ST, Reguero M, Gelfo JN, Kramarz A. 2015. Ancient proteins resolve the evolutionary history of Darwin/'s South American ungulates. Nature.

冨田幸光, 伊藤丙雄, 岡本泰子. 2011. 新版絶滅哺乳類図鑑. 丸善出版: 東京.

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【p. 194~198】

霊長目—われわれが属する分類群 倪喜軍

Primates, The Order to Which We Belong by Xijun Ni

Beard KC, Wang J. 2004. The eosimiid primates (Anthropoidea) of the Heti Formation, Yuanqu Basin, Shanxi and Henan Provinces, People's Republic of China. Journal of Human Evolution 46: 401-432.

Bloch JI, Silcox MT, Boyer DM, Sargis EJ. 2007. New Paleocene skeletons and the relationship of plesiadapiforms to crown-clade primates. Proceedings of the National Academy of Sciences 104: 1159-1164.

Clark WELG. 1962. The antecedents of man: an introduction to the evolution of the primates. Edinburgh University Press: EdinBurgh.

Fleagle JG. 1999. Primate Adaptation and Evolution, Second Edition. Academic Press: London.

Franzen JL, Gingerich PD, Habersetzer J, Hurum JH, von Koenigswald W, Smith BH. 2009. Complete primate skeleton from the middle Eocene of Messel in Germany: morphology and paleobiology. PLoS one 4: e5723.

Godinot M. 1998. A summary of adapiform systematics and phylogeny. Folia primatologica 69: 218-249.

Groves CP. 2005. Order Primates. In: Wilson DE and Reeder DM, eds. Mammal species of the world: a taxonomic and geographic reference Third Edition. Baltimore: The Johns Hopkins University Press. 111-184.

Jaeger J-J, Thein T, Benammi M, Chaimanee Y, Soe AN, Lwin T, Tun T, Wai S, Ducrocq S. 1999. A new primate from the middle Eocene of Myanmar and the Asian early origin of anthropoids. Science 286: 528-530.

Janečka JE, Miller W, Pringle TH, Wiens F, Zitzmann A, Helgen KM, Springer MS, Murphy WJ. 2007. Molecular and genomic data identify the closest living relative of primates. Science 318: 792-794.

Kay RF, Ross C, Williams BA. 1997. Anthropoid origins. Science 275: 797-804.

Kirk EC. 2006. Visual influences on primate encephalization. Journal of Human Evolution 51: 76-90.

Marivaux L, Bocat L, Chaimanee Y, Jaeger JJ, Marandat B, Srisuk P, Tafforeau P, Yamee C, Welcomme JL. 2006. Cynocephalid dermopterans from the Palaeogene of South Asia (Thailand, Myanmar and Pakistan): systematic, evolutionary and palaeobiogeographic implications. Zoologica Scripta 35: 395-420.

Martin RD, Martin A-E. 1990. Primate origins and evolution: a phylogenetic reconstruction. Chapman and Hall Ltd.: London.

Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. 2001. Molecular phylogenetics and the origins of placental mammals. Nature 409: 614-618.

Ni X, Gebo DL, Dagosto M, Meng J, Tafforeau P, Flynn JJ, Beard KC. 2013. The oldest known primate skeleton and early haplorhine evolution. Nature 498: 60-64.

Ni X, Qiu Z. 2012. Tupaiine tree shrews (Scandentia, Mammalia) from the Yuanmou Lufengpithecus locality of Yunnan, China. Swiss Journal of Palaeontology 131: 51-60.

Ni X, Wang Y, Hu Y, Li C. 2004. A euprimate skull from the early Eocene of China. Nature 427: 65-68.

O'Leary MA, Bloch JI, Flynn JJ, Gaudin TJ, Giallombardo A, Giannini NP, Goldberg SL, Kraatz BP, Luo Z-X, Meng J. 2013. The placental mammal ancestor and the post–K-Pg radiation of placentals. Science 339: 662-667.

Rose KD, Rana RS, Sahni A, Kumar K, Missiaen P, Singh L, Smith T. 2009. Early eocene primates from Gujarat, India. Journal of Human Evolution 56: 366-404.

Seiffert ER. 2006. Revised age estimates for the later Paleogene mammal faunas of Egypt and Oman. Proceedings of the National Academy of Sciences of the United States of America 103: 5000-5005.

Williams BA, Kay RF, Kirk EC, Ross CF. 2010. Darwinius masillae is a strepsirrhine—a reply to Franzen et al.(2009). Journal of Human Evolution 59: 567-573.

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【p. 203~206】

私たちは何ものなのか—ネアンデルタール人のDNAから私たちの本性を探る 篠田 謙一

Who Are We? Tracing Our Essential Nature from Neanderthal DNA by Ken-ichi Shinoda

Ding Q, Hu Y, Jin L. 2014. Non-Neanderthal origin of the HLA-DPB1* 0401. Journal of Biological Chemistry 289: 10252-10252.

Fu Q, Li H, Moorjani P, Jay F, Slepchenko SM, Bondarev AA, Johnson PL, Aximu-Petri A, Prüfer K, de Filippo C. 2014. Genome sequence of a 45,000-year-old modern human from western Siberia. Nature 514: 445-449.

Gokhman D, Lavi E, Prüfer K, Fraga MF, Riancho JA, Kelso J, Pääbo S, Meshorer E, Carmel L. 2014. Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science 344: 523-527.

Goodwin W, Ovchinnikov I. 2013. Neanderthal Mitochondrial DNA. eLS.

Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH-Y. 2010. A draft sequence of the Neandertal genome. Science 328: 710-722.

Krause J, Fu Q, Good JM, Viola B, Shunkov MV, Derevianko AP, Pääbo S. 2010. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature 464: 894-897.

Krause J, Lalueza-Fox C, Orlando L, Enard W, Green RE, Burbano HA, Hublin J-J, Hänni C, Fortea J, De La Rasilla M. 2007. The derived FOXP2 variant of modern humans was shared with Neandertals. Current Biology 17: 1908-1912.

Krings M, Stone A, Schmitz RW, Krainitzki H, Stoneking M, Pääbo S. 1997. Neandertal DNA sequences and the origin of modern humans. cell 90: 19-30.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C. 2014. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505: 43-49.

Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468: 1053-1060.

Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, Pugach I, Ko AM-S, Ko Y-C, Jinam TA, Phipps ME. 2011. Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania. The American Journal of Human Genetics 89: 516-528.

Sankararaman S, Mallick S, Dannemann M, Prüfer K, Kelso J, Pääbo S, Patterson N, Reich D. 2014. The genomic landscape of Neanderthal ancestry in present-day humans. Nature 507: 354-357.

Sankararaman S, Patterson N, Li H, Pääbo S, Reich D. 2012. The date of interbreeding between Neandertals and modern humans. PLoS Genetics 8: e1002947.

Temme S, Zacharias M, Neumann J, Wohlfromm S, König A, Temme N, Springer S, Trowsdale J, Koch N. 2014. A Novel Family of Human Leukocyte Antigen Class II Receptors May Have Its Origin in Archaic Human Species. Journal of Biological Chemistry 289: 639-653.

Vernot B, Akey JM. 2014. Resurrecting surviving Neandertal lineages from modern human genomes. Science 343: 1017-1021.

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【p. 194~198】

ゲノム座談会 進化における遺伝子の役割~進化発生生物学の現在・過去・未来
石野 史敏、金児‐石野 知子、倉谷 滋、和田 洋、篠田 謙一、山田 格

Discussion of the Genome: The Role of Genes in Evolution — The Past, Present and Future of Evolutionary Developmental Biology
Fumitoshi Ishino, Tomoko Kaneko-Ishino, Shigeru Kuratani, Hiroshi Wada, Ken-ichi Shinoda, Tadasu K. Yamada

Kawasaki K, Buchanan AV, Weiss KM. 2007. Gene duplication and the evolution of vertebrate skeletal mineralization. Cells Tissues Organs 186: 7-24.

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